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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
BRCA cis rs17065323 1 rs10514847 chr13:44626749 KIAA1704 chr13:45563687-45607742:+ -0.3 -4.42 1.09E-5 Uric acid levels
BRCA cis rs17065323 1 rs10514847 chr13:44626749 NUFIP1 chr13:45513384-45563613:- -0.41 -5.42 7.37E-8 Uric acid levels
BRCA cis rs17065323 1 rs10514847 chr13:44626749 TSC22D1 chr13:45007661-45150701:- -0.25 -3.48 0.000529 Uric acid levels
BRCA cis rs7692995 1 rs10516315 chr4:18016877 NCAPG chr4:17812525-17846485:+ 0.07 3.42 0.000645 Height
BRCA cis rs76419734 1 rs10516526 chr4:106688904 INTS12 chr4:106603787-106629881:- -0.31 -3.82 0.00014 Post bronchodilator FEV1
BRCA cis rs4691139 1 rs10517825 chr4:165893486 TRIM61 chr4:165875600-165898818:- -0.26 -8.16 9.39E-16 Ovarian cancer in BRCA1 mutation carriers
BRCA cis rs9635324 1 rs10518693 chr15:40700022 DISP2 chr15:40650434-40663256:+ 0.34 8.87 2.96E-18 Blood metabolite levels;Blood metabolite ratios
BRCA cis rs9635324 1 rs10518693 chr15:40700022 IVD chr15:40697686-40713512:+ 0.16 5.48 5.36E-8 Blood metabolite levels;Blood metabolite ratios
BRCA cis rs9635324 1 rs10518693 chr15:40700022 OIP5 chr15:41601468-41624819:- 0.08 3.58 0.000358 Blood metabolite levels;Blood metabolite ratios
BRCA cis rs9788721 1 rs10519203 chr15:78814046 AGPHD1 chr15:78799906-78829714:+ 0.15 3.55 0.000408 Post bronchodilator FEV1;Emphysema imaging phenotypes;Local histogram emphysema pattern;Emphysema distribution in smoking;Post bronchodilator FEV1/FVC ratio in COPD;Post bronchodilator FEV1/FVC ratio
BRCA cis rs9788721 1 rs10519203 chr15:78814046 CHRNA5 chr15:78857906-78886458:+ 0.16 5.03 5.78E-7 Post bronchodilator FEV1;Emphysema imaging phenotypes;Local histogram emphysema pattern;Emphysema distribution in smoking;Post bronchodilator FEV1/FVC ratio in COPD;Post bronchodilator FEV1/FVC ratio
BRCA cis rs9638182 1 rs1051921 chr7:73007943 MLXIPL chr7:73007524-73038870:- 0.36 6.83 1.45E-11 Triglycerides
BRCA cis rs11799420 1 rs1052676 chr1:171673054 VAMP4 chr1:171669298-171711214:- 0.19 5.57 3.16E-8 Hippocampal atrophy
BRCA cis rs7665090 1 rs1054029 chr4:103553053 MANBA chr4:103552644-103682151:- 0.21 5.37 9.79E-8 Primary biliary cirrhosis
BRCA cis rs7665090 1 rs1054037 chr4:103552709 MANBA chr4:103552644-103682151:- 0.21 5.39 8.62E-8 Primary biliary cirrhosis